Year: 2015 | Month: June | Volume 8 | Issue 2
Gene Expression Study of Arachis Hypogaea L.
DOI:10.5958/2230-732X.2015.00036.4
Abstract:
Arachis hypogaea L. (The peanut) is an important oilseed crop in tropical and subtropical regions of the world. This species belongs to the subfamily Fabaceae and family Leguminosae. Different parts of the plant such as leaves and seeds are used for many purposes in India. Next-generation sequencing technology (NGS) such as RNA-seq has provided a powerful approach for analyzing the Transcriptome accurately and cheaply. This study is focus on gene expression study of RNA-seq of Arachis hypogaea L. (The peanut); Three SRA files of BioProject ID 243319 downloaded from NCBI database and genome of Arabidopsis thaliana was considered as reference genome for gene expression study. Data analysis carried out with many Bioinformatics tools such as TopHat2, Cufflinks, Cuffmerge, Cuffcompare and Cuffdiff. CummeRbund tool was used to manage, visualize and integrate all of the data produced by a Cuffdiff tool for gene expression analysis. These data reported in the current study will serve as a valuable genetic resource of the Arachis hypogaea L..
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